Dr. Amlanjyoti Dhar

1. Chatterjee, S., Ghosh, K., Dhar, A., and Roy, S.: Ligand specificity and ligand-induced conformational change in gal repressor. Proteins 49: 554-559, 2002. doi: 10.1002/prot.10236.

2. Saha, A., Sharma, A., Dhar, A., Bharttacharyya, B., Roy, S., and Das Gapta, S.K.: Antagonists of Hsp16.3, a low-molecular-weight mycobacterial chaperone and virulence factor, derived from phage-displayed peptide libraries. Appl. Environ. Microbiol. 71: 7334-7344, 2005. DOI: 10.1128/AEM.71.11.7334-7344.2005

3. Mazumder, A., Bandyopadhyay, S., Lewis, D., Dhar, A., Deb, S., Dey, S., Chakrabarti, P. and Roy, S.: A genetic network that balances two outcomes utilizes asymmetric recognition of operator sites. Biophys. J. 102: 1580-1589, 2012. DOI: 10.1016/j.bpj.2012.01.052

4. Lewis, D.E.A. and Dhar, A.: Regulation of the galactose operon in E. coli. In Pomin, H.V. (ed): Galactose: Chemical Structure, Dietary Sources and Clinical Significance. Nova Science Publishers, Inc. Hauppauge, NY, 2014, ISBN: 978-1-63117-928-0.

5. Dhar, A., Mallick, S., Maiti, A., Ghosh, P. Ahmed, I., Bhattacharyya, S., Mandal, T., Manna, A., Singh, S., Nayak, D., Wilder, P., Markowitz, J., Weber, D., Ghosh, M., Chattopadhyay, S., Guha, R., Konar, A., Bandyopadhyay, S., and Roy, S.: Simultaneous inhibition of key growth pathways in melanoma cells and tumor regression by a designed bidentate constrained helical peptide. Biopolymers. 101(4): 344-58, 2014. doi: 10.1002/bip.22505.

6. Lal, A., Dhar, A., Trostel, A., Kouzine, F., Seshasayee, A S., Adhya, S. Genome scale patterns of supercoiling in a bacterial chromosome. Nat Commun. Mar 30;7:11055, 2016. doi: 10.1038/ncomms11055.

7. Hammel, M., Dhar, A., Reyes, F., Chen, J H., Parpana, R., Tang, H., Larabell C A., Tainer J A. and Sankar Adhya, S. HU multimerization shift controls nucleoid compaction. Science Advance. 29 July 2016. doi: 10.1126/sciadv.1600650

8. Dr. Amlanjyoti Dhar, Israr Ahmed, Dr. Shampa Mallick, Prof. Dr. Siddhartha Roy A Peptide-PNA Hybrid Beacon for Sensitive Detection of Protein Biomarkers in Biological Fluids.ChemBioChem. Volume21, Issue15, August 3, 2020, Pages 2121-2125. doi: 10.1002/cbic.202000097

 

Dr. Nazmun Lyle

  1. Lyle N, Sur T, Pramanik K. 2021. Effect of stress on premature aging: gene expression profile of mouse brain through microarray study. Current Neuropharmacol. (Under review)

2. Kayal S, Lyle N, Pramanik K. 2022. Investigating host susceptibility to malaria and other infectious diseases: GWAS and other emerging technologies. Investigating host susceptibility to malaria and other infectious diseases: GWAS and other emerging technologies. Mol Genetics and Genomics (Under review)

3. Ghosh S, Lyle N, Chowdhury M H. 2022. Effect of vaccination on immune protection against various strain of SARS-CoV2. Curr Pharm Biotech. (Under review)

4. Maitra S, Lyle N, Ghosh S, Chowdhury M H. 2022. “Impact of Immunotherapy: Revolutionary Treatment of Lung Cancer”. Curr Mol Pharmacol. (Under review).

5. Lyle N, Chakrabarti S, Sur T, Gomes A, Bhattacharyya D. 2012. Nardostachys jatamansi protects against cold restraint stress induced central monoaminergic and oxidative changes in rats. Neurochem. Res. 37: 2748-2757.

6. Bhattacharyya D, Sur TK, Lyle N, Jana U, Debnath P. K. 2011. A clinical study on the management of generalized anxiety disorder with Vaca (Acorus calamus). Ind J of Trad knowl.10: 668-671.

7. Chatterjee S, Lyle N, Mandal A, Kundu S. 2010. GSTT1 and GSTM1 Gene deletions are not associated with induced hepatotoxicity caused by antitubercular drugs. J Clin Pharm Ther. 35: 465-470.

8. Lyle N, Gomes A, Sur TK, Munsi S, Paul S, Chatterjee S, Bhattacharyya D. 2009. Posssible role of antioxidant property of Nardostachys jatamansi in alleviation of chronic fatigue syndrome. Behav Brain Res. 202: 285-290.

9. Lyle N, Bhattacharyya D, Sur TK, Munsi S, Paul S, Chatterjee S, Gomes A. 2009. Stress modulating antioxidant effect of Nardostachys jatamansi. Ind J Biochem Biophys. 46: 93-98.

10. Chatterjee S, Hariharan C, Lyle N, Mandal A, Kundu S. 2009. Antitubercular drug-induced hepatotoxicity and MDR1 C343ST polymorphism: A Case Control Study. In Drug Safety. 32: 918- 918. 41 Centoria Dr, Private Bag 65901, Mairangi Bay, Auckland 1311, New Zealand: Adis Int Ltd.

11. Chatterjee S, Mandal A, Lyle N, Mukherjee S, Singh AK. 2007. Drug utilization study in a neonatology unit of a tertiary care hospital in eastern India. Pharmacoepidemiol Drug Safety. 16: 1141-1145.

12. Chatterjee S, Lyle N, Ghosh S. 2006. A study of the knowledge, attitude and practice of ADR reporting amongst clinicians in a tertiary teaching hospital. Drug Safety. 29: 641-642.

13. Hossain, C.M.; Ryan, L.K.;Gera, M.; Choudhuri, S.; Lyle, N.;Ali, K.A.; Diamond, G. Antifungalsand Drug Resistance. Encyclopedia2022, 2, 1722–1737. https://doi.org/10.3390/encyclopedia2040118

Dr Suman Dutta

    1.  Dutta S, Hornung S, and Bitan G (2022). Biomarkers in CNS-originating cell-specific EVs – promise and challenges. (Ready for submission).

    2.  Mukherjee A, Bisht B, Dutta S, Paul MK (2022). Current advances in the use of Exosomes, Liposomes, and bioengineered hybrid nanovesicles in cancer detection and therapy. Acta pharmacologica Sinica. [IF: 7.169].

    3. Jothimani G, Pathak S, Dutta D, Banerjee A (2022). Characterization of cancer-associated exosomes isolated from human umbilical cord-derived mesenchymal stem cells. Tissue Eng Regen Med [IF: 4.451]

    4. Palma JA, Martinez J, Vernetti PM, Ma T, Perez MA, Zhong J, Qian Y, Dutta S, Maina KN, Siddique I, Bitan G, Shepherd T, Kang UJ, Kaufmann H (2021). mTOR inhibition with sirolimus in multiple system atrophy: a randomized, double-blind, placebo-controlled futility trial and 1-year biomarker longitudinal analysis. Mov. Disord., DOI: 10.1002/mds.28923. [IF: 10.338]

    5. Dutta S, Hornung S, Kruayatidee A, Maina KN, Rosario ID, Paul K, Markovic D, Palma JA, Serrano GE, Adler CH, Beach TG, Perlman SL, Poon WW, Kang U, Alcalay R, Gylys K, Kaufmann H, Fogel BL, Bronstein JM, Ritz B, Bitan G (2021). α-Synuclein in central-nervous-system-derived blood exosomes distinguishes Parkinson’s disease from multiple system atrophy. Acta Neuropathol. doi.org/10.1007/s00401-021-02324-0. [IF: 17.088]

   6. Di J, Siddique I, Li Z, Malki G, Hornung S, Dutta S, Boghos A, Ericsson I, Hurst I, Ishaaya E, Wang A, Tu S, Klärner FG, Schrader T and Bitan G (2020). The molecular tweezer CLR01 improves behavioral deficits and reduces tau pathology in P301S-tau transgenic mice. Alzheimer’s Research & Therapy. [IF: 8.823]

   7. Hornung S, Dutta S and Bitan G (2020). CNS-derived blood exosomes as a promising source of biomarkers: opportunities and challenges. Front. Mol. Neurosci. DOI: 10.3389/fnmol.2020.00038. [IF: 6.261]

   8. Dutta S, Hornung S, Biggs K and Bitan G (2020). Development of a highly sensitive electrochemiluminescence phospho-S129 α-synuclein assay (Patent filed, manuscript in preparation).

   9. Hayden E.Y., Putman J., Nunez S, Shin W.S., Oberoi M, Charreton M, Dutta S, Li Z, Komuro Y, Joy M.T., Bitan G, Graham A.M., Jiang L, Hinman J.D (2019). Ischemic axonal injury up-regulates MARK4 in cortical neurons & primes tau phosphorylation and aggregation. Acta Neuropathol Commun. doi.org/10.1186/s40478-019-0783-6 [IF: 8.064]

  10.  Yan Z*, Dutta S*, Liu Z, Yu X, Mesgarzadeh N, Ji F, Bitan G and Xie YH (2019). A Label-free platform for identification of Exosomes from Different Sources. ACS Sensors. DOI: 10.1021/acssensors.8b01564. *co-first authors. [IF: 9.618]

  11. Banerjee N, Bandyopadhyay AK, Dutta S, Das J, Chowdhury T, Bandyopadhyay A and Giri AK (2017). Increased miRNA-21 expression contributes to arsenic-induced skin lesions, skin cancers, and respiratory distress in chronically exposed individuals, Toxicology. 378, 10-16. doi:/10.1016/j.tox.2017.01.006. [IF: 4.571]

  12. Dutta S, Reamtong O, Panvongsa W, Kitdumrongthum S, Janpipatkul K, Polkit S, Piyachaturawat P and Chairoungdua A (2015). Proteomics profiling of cholangiocarcinoma exosomes: a potential role of oncogenic protein transfers in cancer progression, BBA-Molecular Basis of Disease. 1852, 1989-99. doi:10.1016/ j. bbadis.2015.06.024. [IF: 6.633]

  13. Dutta S, Kim DW, Jeong HJ, Huang HS, Choi SY. Exogenous Pep-1-Uchl-1 confers protection against proteotoxic stress and neuroinflammation in selective neurodegeneration (ready for submission).

  14. Nateewattana J, Dutta S, Saeeng R, Reabroi S, Suksen K, Weerachayaporn J, Chairoungdua A, and Piyachaturawat P (2013). Induction of apoptosis in cholangiocarcinoma by andrographolide analog is mediated through topoisomerase II alpha inhibition. Eur J Pharmacol. doi: 10.1016/j.ejphar. [IF: 5.195]

  15.  Nateewattana J, Saeeng R, Kasemsook S, Suksen K, Dutta S, Jariyawat S, Chairoungdua A, Suksamrarn A and Piyachaturawat P (2012). Inhibition of topoisomerase II α activity and induction of apoptosis in mammalian cells by semi-synthetic andrographolide analogs. Invest New Drugs. DOI: 10.1007/s10637-012-9868-9. [IF: 3.850]

  16. Chakraborty D, Samadder A, Dutta S, Khuda-Bukhsh A.R (2011). Anti-hyperglycemic potentials of a threatened plant, Helonias dioica: Anti-oxidative stress responses and the signaling cascade. Experimental Biology and Medicine (Maywood). [IF: 4.088]

  17.  Biswas R, Mandal SK, Dutta S, Bhattacharyya SS, Boujedaini N and Khuda-Bukhsh AR (2011). Thujone-rich Fraction of Thuja occidentalis DemonstratesMajor Anti-Cancer Potential: Evidence from In vitro Studies on A375 Cells. eCAM; doi:10.1093/ecam/neq042. [IF: 2.650]

  18. Kwon SW, Sohn EJ, Kim DW, Jeong HJ, Kim MJ, Ahn EH, Kim YN, Dutta S, Kim DS, Park J, Eum WS, Hwang HS, Choi SY (2011). Anti-inflammatory effect of transduced PEP-1-heme oxygenase-1 in Raw 264.7 cells and a mouse edema model. Biochem Biophys Res Comm. 411(2):354-9. [IF: 3.575]

  19. Das D, De A, Dutta S, Biswas R, Khuda-Bukhsh AR (2011). Potentized drug Ars-Alb 30C positively modulates protein biomarkers and gene expressions in Saccharomyces cerevisiae exposed to arsenate. J Integr Med. 9 (7): 752-760. Doi: 10.3736/jcim20110709. [IF: 3.951]

  20. Kim DW, Kim DS, Kim MJ, Kwon SW, Ahn EH, Jeong HJ, Sohn EJ, Dutta S, Lim SS, Cho SW, Lee KS, Park J, Eum WS, Hwang HS, Choi SY (2011). Imipramine enhances the neuroprotective effect of PEP-1-Catalase against ischemic neuronal damage. BMB reports. 44(10):647-52. [IF: 5.041]

  21. De A, Das D, Dutta S, Khuda-Bukhsh AR (2011). Analysis of the capability of ultra-highly diluted glucose to increase glucose uptake in arsenite-stressed bacteria Escherichia coli. J Integr Med. 9(8): 901-912. [IF: 3.951]

  22. De A, Das D, Dutta S, Chakraborty D, Boujedaini N and Khuda-Bukhsh AR (2011). The potentized drug, Arsenicum Album 30C, inhibits intracellular ROS generation in arsenic-exposed bacteria, Escherichia coli. J Integr Med. [IF: 3.951]

  23. Bhattacharyya SS, Paul S, Dutta S and Khuda-Bukhsh AR (2010). Anti-oncogenic potentials of a plant coumarin (7- hydroxy-6-methoxy coumarin) against 7, 12-dimethylbenz [a] anthracene-induced skin papilloma in mice: the possible role of several key signal proteins. J Integr Med Jul; 8(7):645-54. [IF: 3.034]

  24. Khuda-Bukhsh AR, Bhattacharyya SS, Paul S, Dutta S, Boujedaini N and Belon P (2010). Modulation of Signal Proteins: A Plausible Mechanism to Explain How a Potentized Drug Secale Cor 30C Diluted beyond Avogadro’s Limit Combats Skin Papilloma in Mice. eCAM; doi:10.1093/nep084. [IF: 2.650]

  25. Mandal SK, Biswas R, Bhattacharyya SS, Paul S, Dutta S, Pathak S, Khuda-Bukhsh AR (2010). Lycopodine from Lycopodium clavatum extract inhibits proliferation of HeLa cells through induction of apoptosis via caspase-3 activation. Eur J Pharmacol. Jan 25;626(2-3):115-22. [IF: 5.195]

Selected peer-reviewed abstracts:

  1. Dutta S, Rosario I.D., Paul K, Palma J.A., Perlman S.L., Poon W.W., Kaufmann H, Fogel B.L., Bronstein J.M., Ritz B, Bitan G (2019). Neuronal and oligodendroglial exosomal α-synuclein distinguishes Parkinson’s disease from Multiple System Atrophy. Alzheimer’s and Dementia 15(7): P1345. DOI: 10.1016/j.jalz.2019.06.3844

  2. Kaneko N, Guo L, An J, Dutta S, Chong D, Komuro Y, Elahi F, Hinman JD. The Mas Receptor Agonist TXA127 Blocks Neurovascular Inflammation Associated with Sars-CoV-2 Infection. Annals of Neurology. Vol 90 (suppl 27) pg-S67, 2021. https://doi.org/10.1002/ana.26180

  3. Siddique I, Di J, Li Z, Malki G, Hornung S, Dutta S, Boghos A, Ericsson I, Hurst IM, Ishaaya EK, Wang A, Tu S, Klärner FG, Schrader T, Bitan G (2020). Molecular tweezers ameliorate tauopathy in the P301S (PS19) mouse. Alzheimer’s and Dementia 16(S12): P1345. DOI: 10.1002/alz.12278

  4. Dutta S, Hornung S, Biggs K and Bitan G (2019). Development of a novel electrochemiluminescence ELISA for measurement of phosphorylated S129-α-synuclein. Alzheimer’s and Dementia 15(7): P960-961. DOI: 10.1016/j.jalz.2019.06.3120

  5. Dutta S, Rosario I.D., Paul K, Palma J.A., Perlman S.L., Poon W.W., Kaufmann H, Fogel B.L., Bronstein J.M., Ritz B, Bitan G (2019). Analysis of brain-derived blood exosomes for diagnostics of synucleinopathies. Movement Disorders 34(s2) P1172, 2019. https://doi.org/10.1002/mds.27833.

  6. Paul M.K., Dutta S, Bisht B, Ramin S.R., Pagano P, Bitan G, Minna J.D., Dubinett S.M (2018). Exosomes secreted by highly migratory premalignant lung epithelial cells promote epithelial-mesenchymal transition and migration. Cancer Research, Volume 78, Issue 13 Suppl. Doi: 10.1158/1538-7445.AM2018-2015.

  7. Dutta S, Hornung S, Kruayatidee A, Maina KN, Rosario I.D., Paul K, Palma J.A., Perlman S.L., Poon W.W., Kaufmann H, Fogel B.L., Bronstein J.M., Ritz B, Bitan G (2020). Analysis of brain derived-blood exosomes for diagnostics of synucleinopathies. Alzheimer’s and Dementia 16(S12): DOI: 10.1002/alz.12278

  8. Bitan G, Dutta D, Rosario ID, Paul K, Palma JA, Perlman SL, Poon WW, Kaufmann H, Fogel BL, Bronstein JM and Ritz B (2019). Biomarkers in brain-derived exosomes assist in the diagnosis of neurodegenerative diseases. Clinical Pharmacology & Biopharmaceutics.

  9. Dutta S, Rosario I.D., Paul K, Palma J.A., Perlman S.L., Poon W.W., Kaufmann H, Fogel B.L., Bronstein J.M., Ritz B, Bitan G (2018). α-Synuclein in brain-derived blood exosomes distinguishes multiple system atrophy from Parkinson’s disease. Annals of Neurology. Vol 84 (suppl 22) pg-191, 2018. DOI: 10.1002/ana.25331

  10. Dutta S, Chairoungdua A (2017). Cholangiocarcinoma exosomes: proteomic insights and plausible role in carcinogenesis. Journal of Extracellular Vesicles, ISEV 2017. doi.org/10.1080 /20013078.2017.1310414

  11. Hornung S, Dutta S, Biggs K and Bitan G (2019). An electrochemiluminescence ELISA for measurement of phosphorylated S129 α-synuclein. Frontiers in Molecular Neuroscience.

  12. Dutta S, Rosario I.D., Paul K, Palma J.A., Perlman S.L., Poon W.W., Kaufmann H, Fogel B.L., Bronstein J.M., Ritz B, Bitan G (2018). α-Synuclein in neuron- and oligodendroglia-derived blood exosomes distinguishes multiple system atrophy from Parkinson’s disease. Clinical Autonomic Research.

Patent:
  1. Bitan G, Dutta S. An electrochemiluminescence ELISA for pS129-α-Synuclein. UCLA-TDG Case No. 2019-482-1. US patent application No. 62/790,165, 2019. International application No. PCT/US20/12736.

Dr. Amartya Mishra

  1. Mishra, A., Kaur, J. N., McSkimming, D. I., Hegedűsová, E., Dubey, A. P., Ciganda, M., & Read, L. K. (2021). Selective nuclear export of mRNAs is promoted by DRBD18 in Trypanosoma brucei. Molecular Microbiology116(3), 827-840.

 

  1. Klebanov-Akopyan, O#., Mishra, A#., Glousker, G., Tzfati, Y., & Shlomai, J. (2018). Trypanosoma brucei UMSBP2 is a single-stranded telomeric DNA binding protein essential for chromosome end protection. Nucleic Acids Research46(15), 7757-7771.( # equal contribution)

 

  1. Mishra, A., Vinayagam, J., Saha, S., Chowdhury, S., Roychowdhury, S., Jaisankar, P., & Majumder, H. K. (2014). Isobenzofuranone derivatives exhibit antileishmanial effect by inhibiting type II DNA topoisomerase and inducing host response. Pharmacology Research & Perspectives,2(6), e00070.

 

  1. Chowdhury, S., Mukhopadhyay, R., Saha, S., Mishra, A., Sengupta, S., Roy, S., & Majumder, H. K. (2014). Flavone-resistant Leishmania donovani overexpresses LdMRP2 transporter in the parasite and activates host MRP2 on macrophages to circumvent the flavone-mediated cell death. Journal of Biological Chemistry289(23), 16129-16147

 

  1. Saha, S., Mukherjee, T., Chowdhury, S., Mishra, A., Chowdhury, S. R., Jaisankar, P& Majumder, H. K. (2013). The lignan glycosides lyoniside and saracoside poison the unusual type IB topoisomerase of Leishmania donovani and kill the parasite both in vitro and in vivo. Biochemical Pharmacology86(12), 1673-1687.

 

  1. Mishra, A., Paul, S., & Swarnakar, S. (2011). Downregulation of matrix metalloproteinase-9 by melatonin during prevention of alcohol-induced liver injury in mice. Biochimie,93(5), 854-866.

 

  1. Singh, L. P., Mishra, A., Saha, D., & Swarnakar, S. (2011). Doxycycline blocks gastric ulcer by regulating matrix metalloproteinase-2 activity and oxidative stress. World Journal of Gastroenterology17(28), 3310.

 

  1. Mishra, A., Bhattacharya, P., Paul, S., Paul, R., & Swarnakar, S. (2011). An alternative therapy for idiopathic pulmonary fibrosis by doxycycline through matrix metalloproteinase inhibition. Lung India28(3), 174.

 

  1. Singh, L. P., Kundu, P., Ganguly, K., Mishra, A., & Swarnakar, S. (2007). Novel role of famotidine in downregulation of matrix metalloproteinase-9 during protection of ethanol-induced acute gastric ulcer. Free Radical Biology and Medicine43(2), 289-299.

 

  1. Swarnakar, S., Mishra, A., Ganguly, K., & Sharma, A. V. (2007). Matrix metalloproteinase‐9 activity and expression is reduced by melatonin during prevention of ethanol‐induced gastric ulcer in mice. Journal of Pineal Research43(1), 56-64.

 

Book Chapter:

  1. Swarnakar S, Mishra A, Chaudhuri SR (2012). The gelatinases and their inhibitors: the structure–activity relationships. Matrix Metalloproteinase Inhibitors, Experientia Supplementum, Vol 103. Springer, Basel. 57-82.

      Dr Avisek Mondal

  1. Ppt1-deficiency dysregulates lysosomal Ca++ -homeostasis contributing to pathogenesis in amouse model of INCL. Avisek Mondal, Abhilash P. Appu, Tamal Sadhukhan, Maria B. Bagh,Rafael M. Previde, Sriparna Biswas, Stanko Stojilkovic, Aiyi Liu and Anil B Mukherjee. J Inherit Metab Dis. 2021; (J Inherit Metab Dis.,2022; 2022 Feb 12. doi: 10.1002/jimd.12485)

 

  1. Ablation of microRNA-155 and neuroinflammation in a mouse model of CLN1-disease. Sadhukhan T, Bagh MB, Sadhukhan S, Appu AP, Mondal A, Iiben JR, Li T, Coon SL, Mukherjee AB. Biochem Biophys Res Commun. 2021; 571:137-144

 

  1. In a mouse model of INCL reduced S-palmitoylation of cytosolic thioesterase APT1 contributes to microglia proliferation and neuroinflammation. Tamal Sadhukhan , Maria B Bagh ,Abhilash P Appu, Avisek Mondal, Wei Zhang, Aiyi Liu, Anil B Mukherjee. J Inherit Metab Dis.2021 44(4):1051-1069.

 

  1. Cln1-mutations suppress Rab7-RILP interaction and impair autophagy contributing to neuropathology in a mouse model of infantile neuronal ceroid lipofuscinosis. Chinmoy Sarkar, Tamal Sadhukhan, Maria B Bagh, Abhilash P Appu, Goutam Chandra, Avisek Mondal, Arjun Saha, Anil B Mukherjee J Inherit Metab Dis. 2020; 43(5):1082-1101.

 

  1. Cln3-mutations underlying juvenile neuronal ceroid lipofuscinosis cause significantly reducedlevels of Palmitoyl-protein thioesterases-1 (Ppt1)-protein and Ppt1-enzyme activity in the lysosome. Appu AP, Bagh MB, Sadhukhan T, Mondal A, Casey S, Mukherjee AB. J Inherit Metab Dis. 2019;42(5):944-954.

 

  1. Emerging new roles of the lysosome and neuronal ceroid lipofuscinoses. Mukherjee AB, Appu AP, Sadhukhan T, Casey S, Mondal A, Zhang Z, Bagh MB. Mol Neurodegener. 2019;16;14(1):4.

 

  1. Multiple paralogues of α-SNAP in Giardia lamblia exhibit independent subcellular localization and redistribution during encystation and stress. Datta SP, Jana K, Mondal A, Ganguly S, Sarkar S. Parasit Vectors. 2018; 11(1):539.

 

  1. Mannose in Complex with Colocasia esculenta Tuber Agglutinin. Rajagopal Chattopadhyaya and Avisek Mondal. J Glycobiol 2018, 7:2

 

  1. HflX protein protects Escherichia coli from manganese stress. Sengupta S, Mondal A, Dutta D, Parrack P. J Biosci. 2018 Dec;43(5):1001-1013. 15.

 

  1. Crystallization and X-ray analysis of the transcription-activator protein C1 of bacteriophage P22 in complex with the PRE promoter element. Mondal A, Chattopadhyaya R, Datta AB, Parrack P. Acta Crystallogr F Struct Biol Commun. 2015;71(Pt 10):1286-91.

 

  1. HflD, an Escherichia coli protein involved in the lambda lysis-lysogeny switch, impairs transcription activation by lambdaCII. Parua PK, Mondal A, Parrack P. Arch Biochem Biophys. 2010;493(2):175-83

 

 

Dr Manas K. Majumdar

  1. Hoffman, B.E., Newman-Tarr T. M., Gibbard A., Wang S., Hanning C., Pratta M. A., Madore S. J., Kumar S. and Majumdar M. K. Development and characterization of a human articular cartilage-derived chondrocyte cell line that retains chondrocyte phenotype. J Cell Physiol 222:695-702
  1. Hopper DW, Vera MD, How D, Sabatini J, Xiang JS, Ipek M, Thomason J, Hu Y, Feyfant E, Wang Q, Georgiadis KE, Reifenberg E, Sheldon RT, Keohan CC, Majumdar MK, Morris EA, Skotnicki J, Sum PE. 2009. Synthesis and biological evaluation of ((4-keto)-phenoxy)methyl biphenyl-4-sulfonamides: a class of potent aggrecanase-1 inhibitors. Bioorg Med Chem Lett. 2009 May 1;19(9):2487-91.
  1. Collins-Racie LA, Yang Z, Arai M, Li N, Majumdar MK, Nagpal S, Mounts WM, Dorner AJ, Morris E, Lavallie ER. 2009. Global analysis of nuclear receptor expression and dysregulation in human osteoarthritic articular cartilage Reduced LXR signalling contributes to catabolic metabolism typical of osteoarthritis. Osteoarthritis Cartilage. 2009 Jul;17(7):832-42.
  1. Majumdar, M. K., Chockalingam P.S., Bhat R.A., Sheldon R., Keohan C., Blanchet T., Glasson S. and Morris E.A. 2008. Immortalized mouse articular cartilage cell lines retain chondrocyte phenotype and respond to both anabolic factor BMP-2 and pro-inflammatory factor IL-1. J Cell Physiol 215:68-76.
  1. Chockalingam, P.S., Varadarajan U., Sheldon R., Fortier E., LaVallie E.R., Morris E.A.,Yaworsky P.J. and Majumdar M. K – Induction of ADAMTS-4 and Nos2 via NF-kB signaling in primary human osteoarthritic chondrocytes. Arthritis and Rheumatism 56:4074-83.
  1. Majumdar, M. K., Askew, R., Schelling S., Stedman N., Blanchet T., Hopkins B., Morris, A., Glasson S.S. 2007. Double knockout of ADAMTS4 and ADAMTS5 in mice results in physiologically normal animals with the ability to prevent the progression of osteoarthritis. Arthritis and Rheumatism 56:3670-4.
  1. Majumdar, M. K., Chockalingam P.S., Bhat R.A., Sheldon R., Keohan C., Blanchet T., Glasson S. and Morris E.A. 2006. Immortalized cell lines from the mouse xiphisternum preserve chondrocyte phenotype. J Cell Physiol 209:551-559.
  1. LaVallie, E.R., Chockalingam P.S., Collins-Racie L.A., Freeman B.A., Keohan C.C., Leitges M., Dorner A.J., Morris E.A., Majumdar M. K. and Maya Arai. 2006. Protein Kinase C-zeta is upregulated in osteoarthritis cartilage and is required for activation of NF-kB by tumor necrosis factor and interleukin-1 in articular cartilage. J Biol Chem 281:24124-24137.
  1. Xiang, J.S., Hu, Y., Rush, T.S., Thomason, J.R., Ipek, M., Sum, P.E., Abrous, L., Sabatini, J.J., Georgiadis, K., Reifenberg, E., Majumdar, M.K., Morris, E.A., and Tam, S. 2006. Synthesis and biological evaluation of biphenylsulfonamide carboxylate aggrecanase-1 inhibitors. Bioorg Med Chem Lett. 16:311-316.
  1. Glasson, S.S., Askew, R., Sheppard B., Carito B., Blanchet T., Ma H., Flannery C.R., Peluso, D., Kanki K., Yang Z., Majumdar M. K., and Morris, E.A. 2005. Deletion of active ADAMTS5 prevents cartilage degradation in a murine model of osteoarthritis. Nature 434:644-648.
  1. Elena Klyushnenkova, Joseph D. Mosca, Valentina Shustova, Manas K. Majumdar, Kirstin J. Beggs, Donald W. Simonetti, Robert J. Deans, and Kevin R. McIntosh. 2005. T Cell Responses to Allogeneic Human Mesenchymal Stem Cells: Immunogenicity, Tolerance, and Suppression. J Biomed Sci :12(1):47-57.
  1. Glasson, S.S., Askew, R., Sheppard B., Carito B., Blanchet T., Ma H., Flannery C.R., Kanki K., Wang E., Yang Z., Majumdar M. K. and Morris, E.A. 2004. Characterization of and osteoarthritis susceptibility in ADAMTS-4 knockout mice. Arthritis and Rheumatism 50:2547-58.
  1. Takahashi T, Yamamoto H, Ogawa Y, Yoshida S, Kataoka S Majumdar MK, Morris EA and Triple SB., 2003. Role of apoptosis inhibition in various chondrocyte systems. Int J Mol Med. 11:299-303.
  1. Majumdar, M.K., Keane-Moore, M., Buyaner, D., Hardy, W., Moorman, M., and McIntosh R., Mosca, J.D. 2003. Characterization and functionality of cell surface molecules on Human Mesenchymal Stem Cells. J Biomed Sci 10:228-241.
  1. Majumdar M.K., Wang E., and Morris E.A. 2001. BMP-2 and BMP-9 promotes chondrogenic differentiation of human multipotential mesenchymal cells and overcomes the inhibitory effect of IL-1. J Cell Physiol 189:275-284.
  1. *Lee, K., Majumdar, M.K., Buyaner, D., Hendricks, J.K., Pittenger, M.F., and Mosca, J.D., Human Mesenchymal Stem Cells maintain transgene expression during expansion and differentiation. Mol Ther 3:857-66.

*First and second authors had equal contribution.

  1. Majumdar, M.K, Banks, V., Peluso, D., and Morris, E.A, 2000. Isolation, characterization and chondrogenic potential of human bone-marrow-derived multipotential stromal cells. J Cell Physiol. 185:98-106.
  1. Majumdar, M.K., Thiede, M.A., Haynesworth, S.E., Caplan, A.I. and Gerson, S.L. 2000. Human marrow-derived Mesenchymal Stem Cells (MSCs) express hematopoietic cytokines and support long term hematopoiesis when differentiated towards stromal and osteogenic lineages. J of Hematotherapy and Stem Cell Research 9:841-8.
  1. Mosca, J.D., Buyaner, D., Hendricks, J.K., Davies-Sproul, J., Chuang., L., Majumdar, K., Chopra, R., Junker, U., Rigg, R.J., Forestell, S. P., Bohnlein, E., Storb, R., and Sandmaier, B. 2000. Mesenchymal Stem Cells as vehicles for gene delivery. Clin Orthop 379: S71-90.
  1. Majumdar, M.K., Thiede, M.A., Mosca, J.D., Moorman, M., and Gerson, S.L., 1998. Phenotypic and Functional Comparison of Cultures of Marrow-derived Mesenchymal Stem Cells (MSCs) and Stromal Cells. J Cell. Physiol. 176:57-66.
  2. Kapur, R., Majumdar, M.K., Xiao, X., Schindler, K., McAndrews-Hill, M., and Williams, D.A. 1998. Signaling through the interaction of membrane-restricted stem cell factor and c-kit receptor tyrosine kinase: genetic evidence for a differential role in erythropoiesis. Blood 91:879-889.
  1. Allay, J.A., Dennis, J.E., Haynesworth, S.E., Majumdar, M.K., Clapp, D.W., Caplan, A.I., and Gerson, S.L., 1997. LacZ and IL-3 Expression In vivo in Retrovirally Transduced Marrow-Derived Human Osteogenic Mesenchymal Progenitors. Human Gene Therapy 8:1417-1427.
  1. Majumdar, M.K., Everett, E., Xiao, X., Cooper, R., and Williams, D.A., 1996. Xenogeneic expression of human Stem Cell Factor in transgenic mice mimics co-dominant c-kit mutations. Blood 87:3203-3211.
  1. Williams, D. A. and Majumdar, M.K., 1994. Analysis of the Steel Factor (Stem Cell Factor) isoforms in the hematopoietic microenvironment. Stem Cells 12:67-77.
  1. Majumdar, M.K., Feng, L., Medlock, E., Toksoz, D., and Williams, D.A., 1994. Identification and mutation of primary and secondary proteolytic cleavage sites in murine stem cell factor cDNA yields biologically active, cell-associated protein, Biol. Chem., 269:1237-1242.
  1. Majumdar, M.K., McAndrews-Hill, M., and Williams, D.A., 1993. A rapid protocol for the purification of plasmid DNA template suitable for DNA sequencing. Analytical Biochemistry, 208:403-404.
  1. Kozak, S.L., Hoatlin, M.E., Ferro, F.E., Majumdar, M.K., Geib, R.W., Fox, M.T., and Kabat, D., 1993. A Friend virus mutant that overcomes Fv-2r host resistence encodes a small glycoprotein that dimerzes, as processed to cell surfaces, and specifically activates erythropoietin receptor. J. Virol., 67:2611-2620.
  1. Majumdar, M.K., and Williams, D.A., 1992. Minipreparations of plasmid DNA directly from cell culture by the boiling method. BioTechniques, 13:366.
  1. Majumdar, M.K., Cho, C. L., Fox, M. T., Eckner, K.L., Kozak, S., Kabat, D.,and Geib, R.W., 1992. Mutations of the env gene of Friend Spleen Focus-Forming Virus overcome Fv-2r-mediated resistance to Friend Virus-Induced erythroleukemia. J. Virol., 66: 3652-3660.
  1. Geib, R.W., Seaward, M.B., Stevens, M.L., Cho, C.L., and Majumdar, M.K., 1989. RBvirus: a strain of Friend virus that produces a Friend virus-like disease in Fv-2rr. Virus Research, 14: 161-174.

Binita Bhattacharjee

  1. Bhattacharyya, B., Behera, H. T., Mojumdar, A., Raina, V., & Ray, L. (2019). Polyhydroxyalkanoates: Resources, Demands and Sustainability. In Soil Microenvironment for Bioremediation and Polymer Production (pp. 253–270). Wiley. https://doi.org/10.1002/9781119592129.ch14
  2. Upadhyay, Anjani & Bhattacharyya, Binita & Ray, Lopamudra. (2020). Value Added Secondary Metabolites from Microorganism. 4. 90-105.

Dr. Anwesha Deb

1.Deb A, Kaur Grewal R, Roy S, Mitra D. Residue Interaction Dynamics in Vaucheria Aureochrome1 LOV : Bridging Theory and Experiments. Proteins Struct Funct Bioinforma. Published online July 18, 2020:prot.25984. doi:10.1002/prot.25984

2.Dutta S, Deb A, Biswas P, et al. Identification and functional characterization of two bamboo FD gene homologs having contrasting effects on shoot growth and flowering. Sci Rep. 2021;11(1):7849. doi:10.1038/s41598-021-87491-6

Ms. Arita Acharjee

1.Abkallo, H.M., .. Mitaka, H., Acharjee, A., Datta, P.P., .. Pain, A., Culleton, R. (2017). Rapid identification of genes controlling virulence and immunity in malaria parasites. PLoS Pathogens,13(7), p.e1006447.

2.Sen A., Acharjee A., Datta P.P. and Ghosh A. N. (2018). Elementary Characterisation of Vibrio O1 ElTor Podoviridae Phage N2. J Biomol dynamics (Manuscript Accepted).

3.Arita Acharjee, Ananya Chatterjee (2020), Resolution Revolutions on the Cryo-EM Structures of Ribosome- A Study: 1981-2018. International Research Journal of Multidisciplinary Scope (IRJMS), 2020; 1(2): 64-80. DOI: ttps://doi.org/10.47857/irjms.2020.v01i02.009

4.Arita Acharjee (2020), Structural Bioinformatics Predicts Large Intrinsically Disordered Regions of Erythrocyte Binding-Like Proteins of Plasmodium sp.: Functional Implications. International Research Journal of Multidisciplinary Scope (IRJMS), 2020; 1(2): 41-63

5.Ananya Chatterjee, Arita Acharjee, Sagarika Das, Partha P. Datta,Deletion analyses reveal insights into the domain specific activities of an essential GTPase CgtA in Vibrio cholerae, Archives of Biochemistry and Biophysics,Volume 665,2019,Pages 143-151, ISSN 0003-9861,https://doi.org/10.1016/j.abb.2019.03.007.

Dr. Laavanya Das

1. StudyonIn-VitroAntioxidantActivityofMethanolicExtractIsolatedfromDeOiledKernelofMangiferaIndica, Soma Das (Laavanya Das), D .K. Bhattacharyya, M. Ghosh, Asian Academic Journal of Multidisciplinary, vol. 1(18), pp. 85-96,2014.

2. Study on Isolation of Phytochemicals from Sal and Mango Kernel Meals by Different Solvents and Evaluation of In-Vitro Antioxidant Activities. Soma Das (Laavanya Das), D. Bhattacharyya, M. Ghosh, Journal of International Academic Research for Multidisciplinary, vol. 3

3. Isolation of Tannin as Calcium Salt (Calcium Tannate) and as Free Tannin From De Oiled Seeds of Sal (Shorea Robusta) and Evaluation of Its In Vitro Antioxidant Properties, Soma Das (Laavanya Das), D.K. Bhattacharyya and M. Ghosh, Indian Journal of Natural Products and Resources, vol. 6(4),pp. 283-287,2015.

Pinaki Saha

1. Pinaki S, Dibya D, Sudipta S, Madhumita S, Debabrata B. 2022. Production and partial purification of xylanase with special application in pharmaceutical and food industries. 15(6); 2616-20. Research Journal of Pharmacy and Technology.

2. Pinaki S, Dibya D, Madhumita S, Sudipta S, Pratyusa S, Debabrata B. 2021.Kinetic study comparison of immobilized glucose isomerase in stirred tank reactor and packed bed reactor.10(4); 1315-19. Journal of Medical, Pharmaceutical and Allied Sciences.

3. Madhumita S, Dibya D, Pinaki S, Sushmita S, Suman KS, Runu C.Effect of drying kinetics on the quality of the green capsicum (Capsicum annum). 10(4); 3464-68. Journal of Medical, Pharmaceutical and Allied Sciences. Journal of Medical, Pharmaceutical and Allied Sciences.

4. Madhumita S, Dibya D, Pinaki S, Sushmita S, Pratyusa S, Runu C. 2021. Study of physicochemical properties of capsicum powder by different drying techniques. Journal of Medical Pharmaceutical and Allied Sciences). 10(4); 1310-14.

5. Madhumita S, Dibya D, Sushmita S, Pinaki S, Sudipta S, Runu C. 2022. Preparation and evaluation of antioxidants loaded candy using microwave prepared Capsicum powder with optimization of time temperature. 15(7); 2962-68. Research Journal of Pharmacy and Technology.

Dr. Rituparna De

1. De R* and S Dutta. Role of the microbiome in the pathogenesis of COVID-19. Front. Cell. Infect. Immunol. doi: 10.3389/fcimb.2022.736397. Accepted on January 28,2022. (* First and Corresponding author)

2. De R*, Mobile Genetic Elements ofVibrio cholerae and the evolution of its antimicrobial resistance. Front. Trop. Dis (2021).2:691604. doi: 10.3389/fitd.2021.691604

3. De R*, Mukhopadhyay AK, Dutta S. Metagenomic analysis of gut microbiome and resistome of diarrheal fecal samples from Kolkata, India, reveals the core and variable microbiota including signatures of microbial dark matter. Gut Pathog 12, 32 (2020). https://doi.org/10.1186/s13099-020-00371-8. (* First and Corresponding author)

4. De R*, Mukhopadhyay AK, Dutta S. Molecular Analysis of Selected Resistance Determinants in Diarrheal Fecal Samples Collected From Kolkata, India Reveals an Abundance of Resistance Genes and the Potential Role of the Microbiota in Its Dissemination. Front Public Health. 2020;8 61. doi:10.3389/fpubh.2020.00061. PMID: 32219088; PMCID: PMC7078105. (* Corresponding author)

5. De R. Metagenomics: aid to combat antimicrobial resistance in diarrhea. Gut Pathog. 2019;11 47. doi:10.1186/s13099-019-0331-8. PMID: 31636714; PMCID: PMC6791012.

6. Pietz G*, De R*, Hedberg M, Sjöberg V, Sandström O, Hernell O, Hammarström S,Hammarström ML. Immunopathology of childhood celiac disease-Key role of intestinal epithelial cells. PLoS One. 2017;12(9) e0185025. doi:10.1371/journal.pone.0185025. PMID: 28934294; PMCID: PMC5608296. (* equal contribution)

7. Bitar A*, De R*, Melgar S, Aung KM, Rahman A, Qadri F, Wai SN, Shirin T, Hammarström ML. Induction of immunomodulatory miR-146a and miR-155 in small intestinal epithelium of Vibrio cholerae infected patients at acute stage of cholera. PLoS One. 2017;12(3) e0173817. doi:10.1371/journal.pone.0173817. PMID: 28319200; PMCID: PMC5358779. (* equal contribution)

8. De R*, Ramamurthy T, Sarkar BL,Mukhopadhyay AK G P Pazhani, S Sarkar, S Dutta, G B Nair. Retrospective genomic analysis of Vibrio cholerae O1 El Tor strains from different places in India reveals the presence of ctxB-7 allele found in Haitian isolates. Epidemiology andinfection.2017PMID:28712383DOI:10.1017/s0950268817001182 (*First andCorresponding author)

9. De R, Ghosh JB, Sen Gupta S, Takeda Y, Nair GB. The role of Vibrio cholerae genotyping in Africa. J Infect Dis. 2013 Nov;208 Suppl 1 S32-8. doi:10.1093/infdis/jit199. PMID: 24101642.

10. Consiglio J, Vecchione A, Galasso M, Rocci A, Acunzo M, Sapienza MR , Volinia S, Piccaluga PP, De R et al.MiR-221 and MiR-222 Patterns Characterize Burkitt Lymphoma in Human and Mouse Model. Blood. 2012-11-16 DOI: 11.1182/blood.v120.21.1304.1304(conference-abstract)

12. Bhowmik P, Bag PK, Hajra TK, De R, Sarkar P, Ramamurthy T. Pathogenic potential of Aeromonas hydrophila isolated from surface waters in Kolkata, India. J Med Microbiol. 2009 Dec;58(Pt 12) 1549-1558. doi:10.1099/jmm.0.014316-0. PMID: 19713362.